Dmitry G Vassylyev: search on Z-Library

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1

Atomic structure of the RuvC resolvase: A holliday junction-specific endonuclease from E. coli

Mariko Ariyoshi, Dmitry G. Vassylyev, Hiroshi Iwasaki, Haruki Nakamura, Hideo Shinagawa, Kosuke Morikawa

Journal:

Year:

1994

Language:

english

File:

PDF, 3.13 MB

english, 1994

2

Structural Basis for Substrate Selection by T7 RNA Polymerase

Dmitry Temiakov, Vsevolod Patlan, Michael Anikin, William T McAllister, Shigeyuki Yokoyama, Dmitry G Vassylyev

Journal:

Year:

2004

Language:

english

File:

PDF, 694 KB

english, 2004

3

Structural Basis for Double-Sieve Discrimination of L-Valine from L-Isoleucine and L-Threonine by the Complex of tRNAVal and Valyl-tRNA Synthetase

Shuya Fukai, Osamu Nureki, Shun-ichi Sekine, Atsushi Shimada, Jianshi Tao, Dmitry G. Vassylyev, Shigeyuki Yokoyama

Journal:

Year:

2000

Language:

english

File:

PDF, 1.23 MB

english, 2000

4

Structure of a T7 RNA polymerase elongation complex at 2.9 Å resolution

Tahirov, Tahir H., Temiakov, Dmitry, Anikin, Michael, Patlan, Vsevolod, McAllister, William T., Vassylyev, Dmitry G., Yokoyama, Shigeyuki

Journal:

Year:

2002

Language:

english

File:

PDF, 748 KB

english, 2002

5

Structural basis for substrate loading in bacterial RNA polymerase

Vassylyev, Dmitry G., Vassylyeva, Marina N., Zhang, Jinwei, Palangat, Murali, Artsimovitch, Irina, Landick, Robert

Journal:

Year:

2007

Language:

english

File:

PDF, 3.02 MB

english, 2007

6

Structural basis for transcription elongation by bacterial RNA polymerase

Vassylyev, Dmitry G., Vassylyeva, Marina N., Perederina, Anna, Tahirov, Tahir H., Artsimovitch, Irina

Journal:

Year:

2007

Language:

english

File:

PDF, 1.53 MB

english, 2007

7

Crystal Structure of Pyruvate Dehydrogenase Phosphatase 1 and its Functional Implications

Dmitry G. Vassylyev, Jindrich Symersky

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.94 MB

english, 2007

8

A structural basis for transition-state stabilization in antibody-catalyzed hydrolysis: crystal structures of an abzyme at 1.8 Å resolution

Ole Kristensen, Dmitry G Vassylyev, Fujie Tanaka, Kosuke Morikawa, Ikuo Fujii

Journal:

Journal of Molecular Biology

Year:

1998

Language:

english

File:

PDF, 2.65 MB

english, 1998

9

Role of remodeling and spacing factor 1 in histone H2A ubiquitination-mediated gene silencing

Zhang, Zhuo, Jones, Amanda E., Wu, Wei, Kim, Jinman, Kang, Yue, Bi, Xiaobao, Gu, Yue, Popov, Ivan K., Renfrow, Matthew B., Vassylyeva, Marina N., Vassylyev, Dmitry G., Giles, Keith E., Chen, Dongquan,

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.70 MB

english, 2017

10

1P356 Crystallization and X-ray diffraction of SecYE translocon from Thermus thermophilus with a Fab fragment(13. Membrane transport,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Tsukazaki, Tomoya, Mori, Hiroyuki, Ishitani, Ryuichiro, Fukai, Shuya, Perederina, Anna, Vassylyev, Dmitry G., Ito, Koreaki, Nureki, Osamu

Journal:

Seibutsu Butsuri

Year:

2006

Language:

english

File:

PDF, 156 KB

english, 2006

11

Elongation by RNA polymerase: a race through roadblocks

Dmitry G Vassylyev

Journal:

Current Opinion in Structural Biology

Year:

2009

Language:

english

File:

PDF, 994 KB

english, 2009

12

Tracking RNA Polymerase, One Step at a Time

Dmitry G. Vassylyev, Irina Artsimovitch

Journal:

Year:

2005

Language:

english

File:

PDF, 433 KB

english, 2005

13

Structural Basis for Converting a General Transcription Factor into an Operon-Specific Virulence Regulator

Georgiy A. Belogurov, Marina N. Vassylyeva, Vladimir Svetlov, Sergiy Klyuyev, Nick V. Grishin, Dmitry G. Vassylyev, Irina Artsimovitch

Journal:

Year:

2007

Language:

english

File:

PDF, 1.92 MB

english, 2007

14

The polypeptide chain fold in tyrosine phenol-lyase, a pyridoxal-5′-phosphate-dependent enzyme

Alfred A. Antson, Boris V. Strokopytov, Garib N. Murshudov, Michail N. Isupov, Emil H. Harutyunyan, Tatyana V. Demidkina, Dmitry G. Vassylyev, Zbigniew Dauter, Howard Terry, Keith S. Wilson

Journal:

Year:

1992

Language:

english

File:

PDF, 716 KB

english, 1992

15

DNA-repair enzymes

Dmitry G Vassylyev, Kosuke Morikawa

Journal:

Current Opinion in Structural Biology

Year:

1997

Language:

english

File:

PDF, 602 KB

english, 1997

16

Structural Basis of Transcription: Mismatch-Specific Fidelity Mechanisms and Paused RNA Polymerase II with Frayed RNA

Jasmin F. Sydow, Florian Brueckner, Alan C.M. Cheung, Gerke E. Damsma, Stefan Dengl, Elisabeth Lehmann, Dmitry Vassylyev, Patrick Cramer

Journal:

Year:

2009

Language:

english

File:

PDF, 2.19 MB

english, 2009

17

Insights into Structure–Activity Relationships of Bacterial RNA Polymerase Inhibiting Corallopyronin Derivatives

Schäberle, Till F., Schmitz, Alexander, Zocher, Georg, Schiefer, Andrea, Kehraus, Stefan, Neu, Edith, Roth, Martin, Vassylyev, Dmitry G., Stehle, Thilo, Bierbaum, Gabriele, Hoerauf, Achim, Pfarr, Kenn

Journal:

Journal of Natural Products

Year:

2015

Language:

english

File:

PDF, 1.88 MB

english, 2015

18

1P114 1YA1000 Crystal structure of SecDF, a Sec translocon-associated membrane protein(Membrane proteins,Early Research in Biophysics Award Candidate Presentations,Early Research in Biophysics Award,The 48th Annual Meeting of the Biophysical Society of Japan)

Tsukazaki, Tomoya, Mori, Hiroyuki, Echizen, Yuka, Ishitani, Ryuichiro, Fukai, Shyuya, Tanaka, Takeshi, Perederina, Anna, Vassylyev, Dmitry G., Kohno, Toshiyuki, Ito, Koreaki, Nureki, Osamu

Journal:

Seibutsu Butsuri

Year:

2010

Language:

english

File:

PDF, 235 KB

english, 2010

19

A Mechanism of Nucleotide Misincorporation during Transcription due to Template-Strand Misalignment

Richard T. Pomerantz, Dmitry Temiakov, Michael Anikin, Dmitry G. Vassylyev, William T. McAllister

Journal:

Year:

2006

Language:

english

File:

PDF, 646 KB

english, 2006

20

Conformational transition of Sec machinery inferred from bacterial SecYE structures

Tsukazaki, Tomoya, Mori, Hiroyuki, Fukai, Shuya, Ishitani, Ryuichiro, Mori, Takaharu, Dohmae, Naoshi, Perederina, Anna, Sugita, Yuji, Vassylyev, Dmitry G., Ito, Koreaki

Journal:

Year:

2008

Language:

english

File:

PDF, 705 KB

english, 2008

21

The 1.8-Å X-ray structure of the Escherichia coli PotD protein complexed with spermidine and the mechanism of polyamine binding

Shigeru Sugiyama, Yo Matsuo, Dmitry G. Vassylyev, Masaaki Matsushima, Kosuke Morikawa, Katsumi Maenaka, Keiko Kashiwagi, Kazuei Igarashi

Journal:

Protein Science

Year:

1996

Language:

english

File:

PDF, 4.39 MB

english, 1996

22

Structure and function of a membrane component SecDF that enhances protein export

Tsukazaki, Tomoya, Mori, Hiroyuki, Echizen, Yuka, Ishitani, Ryuichiro, Fukai, Shuya, Tanaka, Takeshi, Perederina, Anna, Vassylyev, Dmitry G., Kohno, Toshiyuki, Maturana, Andrés D., Ito, Koreaki, Nurek

Journal:

Year:

2011

Language:

english

File:

PDF, 889 KB

english, 2011

23

1P-041 Crystal structure of bacterial Sec translocon(The 46th Annual Meeting of the Biophysical Society of Japan)

Tsukazaki, Tomoya, Mori, Hiroyuki, Fukai, Shuya, Ishitani, Ryuichiro, Perederma, Anna, Vassylyev, Dmitry G., Ito, Koreaki, Nureki, Osamu

Journal:

Seibutsu Butsuri

Year:

2008

Language:

english

File:

PDF, 294 KB

english, 2008

24

Structural insights into mechanisms of the small RNA methyltransferase HEN1

Huang, Ying, Ji, Lijuan, Huang, Qichen, Vassylyev, Dmitry G., Chen, Xuemei, Ma, Jin-Biao

Journal:

Year:

2009

Language:

english

File:

PDF, 1.57 MB

english, 2009

25

Crystal structures of phenylalanyl-tRNA synthetase complexed with phenylalanine and a phenylalanyl-adenylate analogue

Ludmila Reshetnikova, Nina Moor, Olga Lavrik, Dmitry G. Vassylyev

Journal:

Journal of Molecular Biology

Year:

1999

Language:

english

File:

PDF, 966 KB

english, 1999

26

Is It Easy to Stop RNA Polymerase?

Artsimovitch, Irina, Vassylyev, Dmitry G.

Journal:

Year:

2006

Language:

english

File:

PDF, 744 KB

english, 2006

27

The carboxy-terminal coiled-coil of the RNA polymerase β′-subunit is the main binding site for Gre factors

Vassylyeva, Marina N, Svetlov, Vladimir, Dearborn, Altaira D, Klyuyev, Sergiy, Artsimovitch, Irina, Vassylyev, Dmitry G

Journal:

Year:

2007

Language:

english

File:

PDF, 421 KB

english, 2007

28

RNA Displacement and Resolution of the Transcription Bubble during Transcription by T7 RNA Polymerase

Manli Jiang, Na Ma, Dmitry G. Vassylyev, William T. McAllister

Journal:

Year:

2004

Language:

english

File:

PDF, 662 KB

english, 2004

29

Structural basis for transcription inhibition by tagetitoxin

Vassylyev, Dmitry G, Svetlov, Vladimir, Vassylyeva, Marina N, Perederina, Anna, Igarashi, Noriyuki, Matsugaki, Naohiro, Wakatsuki, Soichi, Artsimovitch, Irina

Journal:

Nature Structural and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 777 KB

english, 2005

30

The NusA N-Terminal Domain Is Necessary and Sufficient for Enhancement of Transcriptional Pausing via Interaction with the RNA Exit Channel of RNA Polymerase

Kook Sun Ha, Innokenti Toulokhonov, Dmitry G. Vassylyev, Robert Landick

Journal:

Journal of Molecular Biology

Year:

2010

Language:

english

File:

PDF, 2.31 MB

english, 2010

31

Crystal Structure of an Asymmetric Complex of Pyruvate Dehydrogenase Kinase 3 with Lipoyl Domain 2 and its Biological Implications

Yancho Devedjiev, C. Nicklaus Steussy, Dmitry G. Vassylyev

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 2.40 MB

english, 2007

32

Regulation through the Secondary Channel—Structural Framework for ppGpp-DksA Synergism during Transcription

Anna Perederina, Vladimir Svetlov, Marina N Vassylyeva, Tahir H Tahirov, Shigeyuki Yokoyama, Irina Artsimovitch, Dmitry G Vassylyev

Journal:

Year:

2004

Language:

english

File:

PDF, 3.83 MB

english, 2004

33

Structural Basis for Transcription Regulation by Alarmone ppGpp

Irina Artsimovitch, Vsevolod Patlan, Shun-ichi Sekine, Marina N Vassylyeva, Takeshi Hosaka, Kozo Ochi, Shigeyuki Yokoyama, Dmitry G Vassylyev

Journal:

Year:

2004

Language:

english

File:

PDF, 945 KB

english, 2004

34

3S2-3 Crystal structure of bacterial Sec translocon(3S2 Structural basis for membrane-mediated transport and signal conversion,The 46th Annual Meeting of the Biophysical Society of Japan)

Tsukazaki, Tomoya, Mori, Hiroyuki, Fukai, Shuya, Ishitani, Ryuichiro, Perederina, Anna, Vassylyev, Dmitry G., Ito, Koreaki, Nureki, Osamu

Journal:

Seibutsu Butsuri

Year:

2008

Language:

english

File:

PDF, 284 KB

english, 2008

35

High Resolution Structure of Bacteriorhodopsin Determined by Electron Crystallography

Yoshiaki Kimura, Dmitry G. Vassylyev, Atsuo Miyazawa, Akinori Kidera, Masaaki Matsushima, Kaoru Mitsuoka, Kazuyoshi Murata, Teruhisa Hirai, Yoshinori Fujiyoshi

Journal:

Photochemistry and Photobiology

Year:

1997

Language:

english

File:

PDF, 3.89 MB

english, 1997

36

Structural biology of enzyme families that ensure the fidelity of protein biosynthesis

Nureki, O., Shirouzu, M., Shimada, A., Nakama, T., Fukai, S., Ishitani, R., Hashimoto, K., Vassylyev, Dmitry G., Yokoyama, S.

Journal:

Seibutsu Butsuri

Year:

2000

File:

PDF, 220 KB

2000

37

Precluding uracil from DNA

Dmitry G Vassylyev, Kosuke Morikawa

Journal:

Year:

1996

Language:

english

File:

PDF, 877 KB

english, 1996

38

Interaction Between HIV-1 Nef and Calnexin

Hunegnaw, Ruth, Vassylyeva, Marina, Dubrovsky, Larisa, Pushkarsky, Tatiana, Sviridov, Dmitri, Anashkina, Anastasia A., Üren, Aykut, Brichacek, Beda, Vassylyev, Dmitry, Adzhubei, Alexei A., Bukrinsky,

Journal:

Arteriosclerosis Thrombosis and Vascular Biology

Year:

2016

Language:

english

File:

PDF, 4.28 MB

english, 2016

39

Recognition mechanism of valine tRNA by valyl-rRNA synthetase

Fukai, S., Nureki, O., Sekine, S., Shimada, A., Vassylyev, Dmitry, Yokoyama, S.

Journal:

Seibutsu Butsuri

Year:

2001

File:

PDF, 264 KB

2001

40

Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 Å resolution

Vassylyev, Dmitry G., Sekine, Shun-ichi, Laptenko, Oleg, Lee, Jookyung, Vassylyeva, Marina N., Borukhov, Sergei, Yokoyama, Shigeyuki

Journal:

Year:

2002

Language:

english

File:

PDF, 1.12 MB

english, 2002

41

Allosteric Modulation of the RNA Polymerase Catalytic Reaction Is an Essential Component of Transcription Control by Rifamycins

Irina Artsimovitch, Marina N. Vassylyeva, Dmitri Svetlov, Vladimir Svetlov, Anna Perederina, Noriyuki Igarashi, Naohiro Matsugaki, Soichi Wakatsuki, Tahir H. Tahirov, Dmitry G. Vassylyev

Journal:

Year:

2005

Language:

english

File:

PDF, 639 KB

english, 2005

42

Structural basis for template-independent RNA polymerization

Tomita, Kozo, Fukai, Shuya, Ishitani, Ryuichiro, Ueda, Takuya, Takeuchi, Nono, Vassylyev, Dmitry G., Nureki, Osamu

Journal:

Year:

2004

Language:

english

File:

PDF, 491 KB

english, 2004

43

Merging the RNA and DNA worlds

Artsimovitch, Irina, Vassylyev, Dmitry G

Journal:

Nature Structural and Molecular Biology

Year:

2007

Language:

english

File:

PDF, 415 KB

english, 2007

44

Preliminary Crystallographic Study of Escherichia coli RuvC Protein.: An Endonuclease Specific for Holliday Junctions

Mariko Ariyoshi, Dmitry G. Vassylyev, Hiroshi Iwasaki, Akira Fujishima, Hideo Shinagawa, Kosuke Morikawa

Journal:

Journal of Molecular Biology

Year:

1994

File:

PDF, 113 KB

1994

45

Crystal Structure of the Translocation ATPase SecA from Thermus thermophilus Reveals a Parallel, Head-to-Head Dimer

Dmitry G. Vassylyev, Hiroyuki Mori, Marina N. Vassylyeva, Tomoya Tsukazaki, Yoshiaki Kimura, Tahir H. Tahirov, Koreaki Ito

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 2.00 MB

english, 2006

46

Crystal Structure of a Lysine Biosynthesis Enzyme, LysX, from Thermus thermophilus HB8

Hiroaki Sakai, Marina N. Vassylyeva, Takanori Matsuura, Shun-ichi Sekine, Kazumi Gotoh, Makoto Nishiyama, Takaho Terada, Mikako Shirouzu, Seiki Kuramitsu, Dmitry G. Vassylyev, Shigeyuki Yokoyama

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 2.49 MB

english, 2003

47

The binding site and mechanism of the RNA polymerase inhibitor tagetitoxin: An issue open to debate

Klyuyev, Sergiy, Vassylyev, Dmitry G.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.35 MB

english, 2012

48

X-ray structure of the complex of regulatory subunits of human DNA polymerase delta

Baranovskiy, Andrey G., Babayeva, Nigar D., Liston, Victoria G., Rogozin, Igor B., Koonin, Eugene V., Pavlov, Youri I., Vassylyev, Dmitry G., Tahirov, Tahir H.

Journal:

Year:

2008

Language:

english

File:

PDF, 1.55 MB

english, 2008

49

Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II

Kulaeva, Olga I, Gaykalova, Daria A, Pestov, Nikolai A, Golovastov, Viktor V, Vassylyev, Dmitry G, Artsimovitch, Irina, Studitsky, Vasily M

Journal:

Nature Structural and Molecular Biology

Year:

2009

Language:

english

File:

PDF, 943 KB

english, 2009

50

Crystal Structure of Troponin C in Complex with Troponin I Fragment at 2.3- angstrom Resolution

Dmitry G. Vassylyev, Soichi Takeda, Soichi Wakatsuki, Kayo Maeda and Yuichiro Maeda

Journal:

Proceedings of the National Academy of Sciences

Year:

1998

Language:

english

File:

PDF, 1.77 MB

english, 1998

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